PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g17660
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 421aa    MW: 45787.6 Da    PI: 9.9912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g17660genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022189211223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C++Cg+ F  ++  + H  + H
  CA02g17660 189 TCHKCGEQFVKWEAVEAHHLSkH 211
                 8*****************98877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280190211IPR007087Zinc finger, C2H2
SuperFamilySSF563995.56E-25213419No hitNo description
Gene3DG3DSA:3.90.228.101.5E-9214412IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MPAVWFALKK SLQCRSEVKD VHDPRSDGRN LSKISTKKAT TVRSGCSRSI ANLKDVIHGS  60
KRHMEKPPLQ SPRSIGSSEL LNPITHEVVL SNSTCELKIT SCNFQDGNGS CRNSVESISA  120
FMGTLKPGTP GPGGQPIGSS RKYRGYGSSP IRKGSPGSLS RKTGAGFGGI VSRPKASSGA  180
DFHTFSALTC HKCGEQFVKW EAVEAHHLSK HAVTELVEGD SSRKIVEIIC RTSWSKPENN  240
SNGIERILKV HNMQKVLAQF EEYRELVKIK ANKLAKKHPR CLADGNELLR FYGTTVECFL  300
GINGSSSLCT SEKCKVCKIL RHGFSIKKEI NGGVGVFTAS TSGRALESIE ENMSSWRKAL  360
IVCRVIAGRV HRPLENVQEL IGQSGFDSLA GKVGVYSNIE ELYLLNPKAL LPCFVVICKS  420
*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560063.10.0PREDICTED: uncharacterized protein LOC107859533
TrEMBLM1BYS00.0M1BYS0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000559290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22442235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-167C2H2 family protein