PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g17660

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 421aa MW: 45787.6 Da PI: 9.9912

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g17660	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	189	211	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F ++ + H + H CA02g17660 189 TCHKCGEQFVKWEAVEAHHLSkH 211 8*****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	190	211	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.56E-25	213	419	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.5E-9	214	412	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MPAVWFALKK SLQCRSEVKD VHDPRSDGRN LSKISTKKAT TVRSGCSRSI ANLKDVIHGS 60 KRHMEKPPLQ SPRSIGSSEL LNPITHEVVL SNSTCELKIT SCNFQDGNGS CRNSVESISA 120 FMGTLKPGTP GPGGQPIGSS RKYRGYGSSP IRKGSPGSLS RKTGAGFGGI VSRPKASSGA 180 DFHTFSALTC HKCGEQFVKW EAVEAHHLSK HAVTELVEGD SSRKIVEIIC RTSWSKPENN 240 SNGIERILKV HNMQKVLAQF EEYRELVKIK ANKLAKKHPR CLADGNELLR FYGTTVECFL 300 GINGSSSLCT SEKCKVCKIL RHGFSIKKEI NGGVGVFTAS TSGRALESIE ENMSSWRKAL 360 IVCRVIAGRV HRPLENVQEL IGQSGFDSLA GKVGVYSNIE ELYLLNPKAL LPCFVVICKS 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MPAVWFALKK SLQCRSEVKD VHDPRSDGRN LSKISTKKAT TVRSGCSRSI ANLKDVIHGS  60
KRHMEKPPLQ SPRSIGSSEL LNPITHEVVL SNSTCELKIT SCNFQDGNGS CRNSVESISA  120
FMGTLKPGTP GPGGQPIGSS RKYRGYGSSP IRKGSPGSLS RKTGAGFGGI VSRPKASSGA  180
DFHTFSALTC HKCGEQFVKW EAVEAHHLSK HAVTELVEGD SSRKIVEIIC RTSWSKPENN  240
SNGIERILKV HNMQKVLAQF EEYRELVKIK ANKLAKKHPR CLADGNELLR FYGTTVECFL  300
GINGSSSLCT SEKCKVCKIL RHGFSIKKEI NGGVGVFTAS TSGRALESIE ENMSSWRKAL  360
IVCRVIAGRV HRPLENVQEL IGQSGFDSLA GKVGVYSNIE ELYLLNPKAL LPCFVVICKS  420
*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016560063.1	0.0	PREDICTED: uncharacterized protein LOC107859533
TrEMBL	M1BYS0	0.0	M1BYS0_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400055929	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-167	C2H2 family protein